Alright so this mess started when I added my SSD, What I think occured is I somehow switched which sata channel went where. The first error I get is that the RAID 1 has been degraded (not destroyed, the HDD still works it was split back into 2 Harddrives).
 
Question 1. How do I rebuild the raid array? I rebuilt an array before when the drive actualy was fried and it was like 1 click of a button, I am pressing F10 to enter raid cofniguration and press"R" to rebuild but getting nothing. I am looking for the manual to see if there are specific sata ports on the board I need to use.
 
Question 2. When I boot now, I have set the HDD to boot first but I still get the options in the following picture. IF I select the bottom option, it boots my HDD. If i select the top option it boots my SSD. Why does the computer not just boot into the one that I have set to boot first through BIOS? Also When the SSD is plugged in by itself I get the error messages in the second picture, leading me to think some part of the operating system of the SSD somehow was installed on the HDD becuase it wont work without it?  Any ideas?

 

 
Here is a picture of my motehrboard and the way the satas are labled, I forget if the RAID needs to be connected to a certain sequence of them? Also I found a picture of enabling raid in the BIOS and I see I had 2 set for enabled, but they are labled differently than what is plugged in. How can I figure out what is really what channel and enable raid on it?